Deep Learning for Protein Structure Prediction

Enhancing Drug Discovery and Development

Authors

  • Dr. Alice Johnson Senior Research Scientist, Department of Biochemistry, University of California, Los Angeles, CA, USA Author

Keywords:

Deep learning, protein structure prediction, drug discovery, convolutional neural networks

Abstract

The rapid advancements in deep learning technologies are revolutionizing the field of protein structure prediction, significantly impacting drug discovery and development. This paper explores the transformative role of deep learning models in predicting protein structures, which are essential for understanding biological processes and designing effective therapeutic agents. Traditional methods of protein structure prediction, such as homology modeling and threading, have been limited by their computational complexity and reliance on known structures. In contrast, deep learning approaches leverage vast datasets of protein sequences and structures, enabling more accurate predictions and insights into protein functionality. This paper discusses the various deep learning architectures used for protein structure prediction, including convolutional neural networks (CNNs), recurrent neural networks (RNNs), and transformer models. Furthermore, it highlights case studies demonstrating the effectiveness of these models in drug discovery, particularly in identifying novel drug candidates and optimizing existing ones. The implications of enhanced protein structure prediction for personalized medicine and therapeutic interventions are also examined. Ultimately, this research underscores the potential of deep learning to accelerate drug discovery processes and improve treatment outcomes in various diseases.

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References

Gayam, Swaroop Reddy. "Deep Learning for Predictive Maintenance: Advanced Techniques for Fault Detection, Prognostics, and Maintenance Scheduling in Industrial Systems." Journal of Deep Learning in Genomic Data Analysis 2.1 (2022): 53-85.

Venkata, Ashok Kumar Pamidi, et al. "Reinforcement Learning for Autonomous Systems: Practical Implementations in Robotics." Distributed Learning and Broad Applications in Scientific Research 4 (2018): 146-157.

Nimmagadda, Venkata Siva Prakash. "Artificial Intelligence for Supply Chain Visibility and Transparency in Retail: Advanced Techniques, Models, and Real-World Case Studies." Journal of Machine Learning in Pharmaceutical Research 3.1 (2023): 87-120.

Putha, Sudharshan. "AI-Driven Predictive Maintenance for Smart Manufacturing: Enhancing Equipment Reliability and Reducing Downtime." Journal of Deep Learning in Genomic Data Analysis 2.1 (2022): 160-203.

Sahu, Mohit Kumar. "Advanced AI Techniques for Predictive Maintenance in Autonomous Vehicles: Enhancing Reliability and Safety." Journal of AI in Healthcare and Medicine 2.1 (2022): 263-304.

Kondapaka, Krishna Kanth. "AI-Driven Predictive Maintenance for Insured Assets: Advanced Techniques, Applications, and Real-World Case Studies." Journal of AI in Healthcare and Medicine 1.2 (2021): 146-187.

Kasaraneni, Ramana Kumar. "AI-Enhanced Telematics Systems for Fleet Management: Optimizing Route Planning and Resource Allocation." Journal of AI in Healthcare and Medicine 1.2 (2021): 187-222.

Pattyam, Sandeep Pushyamitra. "Artificial Intelligence in Cybersecurity: Advanced Methods for Threat Detection, Risk Assessment, and Incident Response." Journal of AI in Healthcare and Medicine 1.2 (2021): 83-108.

Ahmad, Tanzeem, et al. "Explainable AI: Interpreting Deep Learning Models for Decision Support." Advances in Deep Learning Techniques 4.1 (2024): 80-108.

Zhang, Q., et al. (2021). Protein structure prediction: A journey from the past to the future. Nature Reviews Molecular Cell Biology, 22(1), 47-61.

Frosst, N., & Hinton, G. E. (2017). Distilling a neural network into a soft decision tree. Proceedings of the 31st International Conference on Neural Information Processing Systems, 1-10.

Cheng, J., et al. (2020). Predicting protein structures with deep learning: Current state and future directions. Nature Reviews Chemistry, 4(10), 673-687.

Obermeyer, Z., & Emanuel, E. J. (2016). Predicting the future—big data, machine learning, and health care. New England Journal of Medicine, 375(13), 1216-1219.

Hwang, K., et al. (2021). AI and drug discovery: Lessons learned from the AlphaFold challenge. Trends in Pharmacological Sciences, 42(7), 522-525.

Koo, H., et al. (2019). Challenges and opportunities in machine learning for drug discovery. Nature Reviews Drug Discovery, 18(6), 457-458.

Shakhnarovich, G., et al. (2020). AI for drug discovery: The challenges of drug repurposing. Nature Reviews Drug Discovery, 19(9), 579-580.

Browning, D. F., & Henshaw, S. W. (2019). Advances in computational protein design and engineering. Nature Reviews Molecular Cell Biology, 20(4), 228-229.

Szydłowski, D., et al. (2021). The role of AI in drug discovery and development: A review. Drug Discovery Today, 26(4), 894-902.

Lee, S., et al. (2020). AI and the future of drug discovery: Opportunities and challenges. Nature Reviews Drug Discovery, 19(4), 225-226.

Zhang, J., et al. (2021). AI-driven drug discovery: State of the art and future prospects. Nature Reviews Drug Discovery, 20(6), 407-408.

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Published

12-12-2023

How to Cite

[1]
Dr. Alice Johnson, “Deep Learning for Protein Structure Prediction: Enhancing Drug Discovery and Development”, Australian Journal of Machine Learning Research & Applications, vol. 3, no. 2, pp. 524–530, Dec. 2023, Accessed: Nov. 22, 2024. [Online]. Available: https://sydneyacademics.com/index.php/ajmlra/article/view/160

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